UPD-CS moves to boost PHL’s scientific output with better resource procurement

UPD-CS moves to boost PHL’s scientific output with better resource procurement

Published: May 24, 2023

By: Eunice Jean C. Patron

The UPD-CS, led by its dean, Dr. Giovanni Tapang (seventh from right), and the UPPO, represented by its director, Atty. Flor Rissa Ofilada (sixth from left), are strengthening the procurement process towards accelerating the pursuit of science at the College. (Photo credit: Shedy Masayon)

The University of the Philippines – Diliman College of Science (UPD-CS) already produces a sizable share of the Philippines’ total scientific output, but aims to further this by improving and hastening its procurement of resources.

 

“As much as 44% of all the publications in UP Diliman come from the College of Science. This is equivalent to 10% of the output of the entire UP system, and 2.5% the output of the entire country,” UPD-CS Dean Giovanni Tapang said at the recent launch of the College’s training partnership with the UP Procurement Office (UPPO). 

 

With over 400 faculty members, half of whom hold doctorate degrees, the UPD-CS is at the forefront of scientific research in the Philippines. Apart from this, the College also mentors a significant portion of the country’s future science, technology, and innovation leaders: it currently produces over 300 graduates per year, at the undergraduate and graduate levels combined.

 

Yet, in 2019 alone, the Philippines only had 189 scientists per million population—a far cry from the ideal 380 scientists per million, according to data from the National Academy of Science and Technology (NAST). Dean Tapang hopes to boost UPD-CS’ capacity to address this gap by implementing better procurement processes. 

 

“We need to know how to spend money wisely to get things done. We want our people to know what to do so they can conduct their research as efficiently as possible. It’s not a science per se, but it can be solved by science,” he said.

 

Dean Tapang underscored the direct importance of the procurement process on scientific research itself, pointing out that streamlining these procedures would have a positive impact on the College’s output. UPPO Director Atty. Flor Rissa Ofilada concurred, even as she underscored the crucial roles of both researchers and administrators in scientific advancement.

 

“At each stage of the procurement process, the end users assume a crucial role as the process’ main actors. They are the initiators,” Atty. Ofilada said. “Our research assistants and administrative officers are important, as they are the main driving force behind procurement not only in the College but also in the university. No procurement activity can occur without their proactive involvement,” she concluded.

 

For interview requests and other concerns, please contact media@science.upd.edu.ph

 

 

Sources:

Arayata, Ma. C. (2019, July 12). PH needs more scientists: NAST. Philippine News Agency. https://www.pna.gov.ph/articles/1074747

UPD-CS NIP physicist co-authors groundbreaking research on mysterious superconductors

UPD-CS NIP physicist co-authors groundbreaking research on mysterious superconductors

Published: May 10, 2023

By: Timothy James M. Dimacali

A team of physicists, including a Filipino researcher, have found that existing theories don’t completely account for the mysterious behavior of high-temperature superconducting materials that have left even Nobel laureates stumped for decades. The team’s discovery, which promises to spark completely new lines of research, was published recently in the prestigious journal, Nature Materials.

UPD-CS physicist Dr. Miguel Sulangi (left) beams with pride following his successful PhD defense in 2018 alongside Leiden University’s Dr. Jan Zaanen, his thesis advisor and co-author on the recent groundbreaking Nature Materials paper on overdoped cuprate superconductors. (Photo credit: Thea Sulangi)

Superconducting materials enable electricity to pass through them with no resistance, potentially allowing the creation of everything from magnetic-levitation trains to unprecedentedly powerful supercomputers. For a special kind of materials called high-temperature superconducting cuprates, superconductivity happens when electrons are removed in a process called “doping.” 

 

Baffling even Nobel laureates for decades

 

Exactly how and why this happens is a mystery that has baffled even Nobel laureates. It was commonly thought, however, that when a large number of electrons are removed—that is, when cuprate superconductors are “overdoped”—they would behave as described by Bardeen-Cooper-Schrieffer (BCS) Theory, which was developed in the 1950s and has been used ever since to help explain conventional superconducting materials. 

But new experiments by a team of researchers supervised by Dr. Milan P. Allan of Leiden University in the Netherlands has shown that this is not the case. Filipino physicist Dr. Miguel Sulangi from the University of the Philippines – Diliman College of Science National Institute of Physics (UPD-CS NIP) collaborated with Dr. Allan’s team on the theoretical modeling of these materials. 

 

“Our paper poses a challenge to the present understanding of cuprate superconductors at so-called ‘overdoping,’” Dr. Sulangi said. “This is the latest of a fresh round of papers showing that overdoped cuprates are not as conventional or ‘BCS-like’ as everyone previously thought they were.”

 

A deeper mystery than originally thought

 

Dr. Sulangi expressed hope that these new findings would not just rewrite textbooks but also spark new research interest in overdoped cuprates, which have largely been overlooked—particularly by scientists who believed that the materials’ superconductivity could simply be explained by traditional BCS theory. “We hope to convince experimentalists and theorists that these materials are anomalous and worthy of intense study. We want to provoke further research into this,” he explained.

 

“What makes this study important is that it not only clarifies the nature of overdoped cuprate superconductivity, but it also reveals that the mystery surrounding cuprate superconductors is deeper than we originally thought,” said UPD-CS NIP associate professor Dr. Kristian Hauser Villegas, who was not involved with the study. “It’s good to see more Filipino researchers working at the forefront of physics and other fields, shoulder to shoulder with international colleagues. Hopefully, this encourages more Filipino kids to pursue science and add to our collective contributions to the growth of human knowledge,” he added.

 

The team described their findings in a paper entitled, Puddle formation and persistent gaps across the non-mean-field breakdown of superconductivity in overdoped (Pb,Bi)2Sr2CuO6+δ.

 

For interview requests and other concerns, please contact media@science.upd.edu.ph

 

References:

Tromp, W.O., Benschop, T., Ge, JF. et al. Puddle formation and persistent gaps across the non-mean-field breakdown of superconductivity in overdoped (Pb,Bi)2Sr2CuO6+δ. Nature Materials. (2023). https://doi.org/10.1038/s41563-023-01497-1

UP mathematicians find safer contraceptive hormone doses

UP mathematicians find safer contraceptive hormone doses

Published: May 9, 2023

By: Eunice Jean C. Patron

The amount of hormones in contraceptives can be reduced by as much as 92% without impacting their effectiveness, new math research from the University of the Philippines – Diliman College of Science (UPD-CS) has found.

Using mathematical models, researchers from the UPD-CS institute of Mathematics have found that contraceptives can still remain effective despite reducing their hormone content by as much as 92%. (Photo credit: Towfiqu Barbhuiya / Pexels.com)

Most contraceptives available today contain either or both estrogen and progesterone hormones to block ovulation, the phase of the menstrual cycle wherein an egg is released into the uterus. But while effective, hormonal contraception has its drawbacks: an increased potential for blood clots, heart attacks, strokes, mood disorders, and other health risks.

 

UPD-CS Institute of Mathematics (UPD-CS IM) Ph.D. Mathematics graduate Brenda Lyn Gavina and Associate Professor Dr. Aurelio de los Reyes V, alongside collaborators Dr. Mette Olufsen of North Carolina State University, Dr. Suzanne Lenhart of the University of Tennessee, and Dr. Johnny Ottesen of the Roskilde University of Denmark, analyzed the hormone levels of 23 women aged 20 to 34 years old with regular menstrual cycles. Their research revealed that estrogen-only contraceptives could work just as effectively even if hormone doses were reduced by as much as 92%. Meanwhile, hormone doses in progesterone-only contraceptives could be decreased by as much as 43% while still achieving the same effectivity.

 

In their study, the researchers developed a modified menstrual cycle model to track natural hormone levels and the effect of hormones taken through contraceptives. They then applied mathematics to determine the lowest amount of hormones needed to prevent ovulation. Apart from finding lower yet effective hormone dosages, they also found that intaking these contraceptives before the tenth day of the menstrual cycle is just as effective in preventing pregnancy as a daily dose.

 

The study opens new avenues for further research in hormonal birth control. “With the rapid development of new implants and injections providing continuous administration, there is great potential to implement new treatment scheme minimizing dose,” the researchers concluded in their study, published last April 13 in the journal PLoS Computational Biology.

 

“Reducing the dosage of hormonal contraceptives has been a longstanding objective of safer contraception. Our modeling/computational study suggests an effective and cost-efficient hormonal contraceptive administration.” Dr. de los Reyes said. “We also hope to build on the current model to investigate reproductive health concerns in women like polycystic ovarian syndrome (PCOS) and ovarian cysts. We would like to caution that our model is not directly translatable to clinical setup (or actual patients) as of yet, but the principles and its proof of concept could be potentially implemented to achieve safe and cost-efficient contraception.”

 

Researchers from the UP Diliman College of Science’s Institute of Mathematics, working alongside international colleagues, have found that the hormone levels in contraceptives could be cut by as much as 92% without impacting their effectiveness. (Photo credit: Aurelio de los Reyes V et al.)

For interview requests and other concerns, please contact media@science.upd.edu.ph

 

References:

Gavina, B. L. A., de los Reyes, A. A., Olufsen, M. S., Lenhart, S., & Ottesen, J. T. (2023). Toward an optimal contraception dosing strategy. PLOS Computational Biology, 19(4). https://doi.org/10.1371/journal.pcbi.1010073  

UP embarks on pioneering study into ‘Rugby’ abuse

UP embarks on pioneering study into ‘Rugby’ abuse

Published: April 28, 2023

By: Timothy James M. Dimacali

Scientists from across the University of the Philippines (UP) are pioneering a first-of-its-kind multidisciplinary study into the chemical, physical, and psychological impacts of solvent abuse on the country’s thousands of so-called “Rugby boys and girls.”

One of the research questions that UP scientists are trying to answer is if and how social behaviors in animals are affected by addiction to toluene, the key ingredient in “Rugby” contact cement. The researchers will then look at translating these findings to humans. (PHOTO CREDIT: Dr. Rohani Cena-Navarro)

Novel Approaches to Treatment of Addiction and Depression using Animal Models is a three-year research program spearheaded by the UP Manila National Institutes of Health (UPM-NIH), the National Center for Mental Health, the UP College of Medicine, the UP Philippine General Hospital, and the UP Diliman College of Science Institute of Chemistry (UPD-CS IC). It is being supervised by internationally-renowned neurobehavioral scientist Dr. Gregory Quirk of the University of Puerto Rico School of Medicine. 


“Attempts to treat toluene or ‘Rugby’ addiction have been largely unsuccessful due to severe withdrawal and craving symptoms that trigger relapse. What is needed to help adolescents overcome their addictions are new treatments that reduce toluene withdrawal and craving,” said program leader Dr. Rohani Cena-Navarro of the UPM-NIH.


“Rodent models have been used to develop such pharmacological treatments for other addictive drugs, but no such model has been developed for toluene. This collaboration between scientists and clinicians hopes to address this societal problem using laboratory animals,” she added.


This research is being  supported by the Department of Science and Technology – Philippine Council for Health Research and Development (DOST-PCHRD).


Origins of the nation’s thousands of ‘Rugby boys and girls’


The densely-populated urban streets of the Philippines are home and playground to as many as one million street children, many of whom are adolescents from the poorest families or even abandoned by parents. Left to fend for themselves, many turn to substance abuse to alleviate their hunger by inhaling toluene—an aromatic hydrocarbon solvent found in cheap and easily-obtainable contact cement, popularly sold under the “Rugby” brand name in local hardware stores. 


Estimated to number in the thousands nationwide, these young people eventually develop a physiological addiction and resort to begging, scavenging, or stealing not only to quell their hunger but also to sustain their toluene addiction.  Seeing groups of young boys—and girls!—running around the streets sniffing bags of glue has become so commonplace to the ordinary Filipino citizen, that the colloquial term “Rugby boys” is now a widely-used pejorative.


Substance abuse among street children is a long-standing societal issue that requires proper public health intervention. Acknowledging the need for local research to tackle inhalant abuse among adolescents will be very significant in providing recommendations and strengthening ongoing support systems, policies, and interventions. 


Addressing social issues and sex differences


So where does science fit into this societal issue? This is exactly what this team of researchers hopes to achieve by developing the first Addiction Research Laboratory in the country, using animal models.  


“In the years to come, it is our hope that the establishment of this Addiction Research Program will further open opportunities for research addressing the craving and withdrawal stages of addiction,” said UPD-CS IC’s Dr. Grace Gregorio, who is researching how toluene affects rats in an effort to understand the solvent’s effects on people. 


She and her fellow researchers are also looking into sex differences in the effects of toluene exposure, which represents a novel approach that has never been done before. “I bring in my analytical chemistry expertise to this meaningful undertaking by measuring toluene levels in the blood of male and female rodents,” Dr. Gregorio said. 


“There is much that we, as a society, don’t know and understand about solvent abuse. One of our research specialists, Jariel Bacar, rightly points out that girls can be affected too—and in very different ways from boys. The project is looking into what these differences are,” she explained. 


Developing tailored treatments for solvent-addicted adolescents


The first-ever model of its kind for toluene-based solvent addiction in the Philippines, this research is paving the way for new treatments for overcoming withdrawal and craving. The team hopes to translate their findings for use in human subjects as an attempt in addressing the pervasive drug addiction and chronic relapse in individuals.  Such experimental treatments for toluene have not been deeply investigated anywhere else in the world, because inhalant abuse is not as rampant in more developed countries. 


Now in its second year, the project has already completed its first two phases: identifying validated methods to quantify toluene in rodent blood and establishing the long-term effects of toluene after chronic exposure. Using validated methods, the team is investigating the effects of chronic exposure that last long after the drug has been stopped.  These include increased craving for the drug, increased anxiety, and impaired social functioning, all of which increase the likelihood of relapse following treatment. Novel treatments will be tested to diminish these withdrawal symptoms and restore the brain to its pre-addiction state.  


Ultimately, Novel Approaches to Treatment of Addiction and Depression using Animal Models aims to address one of the greatest challenges faced by today’s researchers: interweaving science into the fabric of a complex, busy, and highly diverse society to serve its well-intended purpose to the community that needs it the most. By the end of the project, the researchers hope to have developed tailored treatments for boys and girls who are addicted to toluene. 

The research team behind the multidisciplinary research program, Novel Approaches to Treatment of Addiction and Depression using Animal Models. Top row (L-R): Ajina Carampel (MD-PhD Student), Richelle Manalo, Dr. Grace Gregorio (UPD-CS IC), Dr. Rohani C. Navarro (Program Leader), Dr. Gregory Quirk (Supervising Scientist), Jariel Bacar and Johanna Munar (Project Technical Specialists I). Bottom row (L-R): Joannes Luke Asis (MD-PhD Student), Noel Agrava (Lab Aide), Brett Castro (University Research Associate), Dr. Bryan Bulatao (Project Leader), Herbert Montalban (Lab Aide), and Arturo Bermejo III (Project Assistant). (PHOTO CREDIT: Ilona Janairo)

For interview requests and more information on the multidisciplinary research program, Novel Approaches to Treatment of Addiction and Depression using Animal Models, please contact media@science.upd.edu.ph

Hands-on STEM learning in every home with VISSER

Hands-on STEM learning in every home with VISSER

Published: April 28, 2023

By: Eunice Jean C. Patron and Marie Asheidee M. Masayon

PHOTO CREDIT: making.technology

The Philippines has long lagged behind the rest of the world in terms of science, technology, engineering, and mathematics (STEM) learning: in 2018, the country was the second worst out of 79 countries worldwide in terms of the science and mathematics performance of high school students.

 

This dearth prompted physics professor and current Dean of the University of the Philippines – Diliman College of Science (UPD-CS) Dr. Giovanni A. Tapang to spearhead the Versatile Instrumentation System for Science Education and Research (VISSER).

 

This low-cost, portable handheld device that students can use for their laboratory experiments was developed in collaboration with researchers from UP Diliman and UP Los Baños, with support from the Department of Science and Technology (DOST) and the UP Diliman Office of the Vice President for Academic Affairs (UPD OVPAA).

 

“Gaining a better understanding of science requires laboratory experiments, but specific equipment is often expensive, making it difficult for some high schools in the Philippines to purchase necessary equipment,” Dr. Tapang said. “VISSER addresses this problem through low-priced modern digital tools for learning to help transform students’ curiosity into scientific competency and broaden their perspective by exploring the experiential aspect of science.”

PHOTO CREDIT: making.technology

VISSER aims to bring a modern science laboratory experience to high schools all over the country. Designed for students on a STEM track, the device allows for hands-on experiments in various subjects including physics, chemistry, biology, environmental science, and engineering.

 

In 2022 alone, close to a hundred schools across the country received VISSER kits. An improved version is in the works, for use in online classes and distance learning, aptly dubbed VISSER@Home.

 

Dr. Tapang will be talking at length about VISSER at the upcoming iStories webinar hosted by UPD-CS this coming April 24, 2023. Joined by VISSER co-inventor and PhD candidate Dwight Angelo Bruzon, the forum will tackle not just the ideation and development of VISSER, but also its mass production and distribution.

 

“Thirty-five percent of high schools in the Philippines have no laboratories. Meanwhile, among those with laboratories, 33% have no access to digital tools for learning. Our mission is to put modern laboratories in every school and college in the country,” Bruzon noted.

PHOTO CREDIT: making.technology

iStories is a series of innovation-themed talks, storytelling, and activities featuring local and international scientists. The initiative aims to ignite the creativity and inventiveness of young scientists not just from UPD-CS but from other institutes inside and outside UP.

 

The second session of iStories on April 24, 2023 (Monday) will be held on-site at the College of Science Admin Auditorium. Only participants outside Metro Manila will be allowed to join the forum via Zoom.

 

The iStories series is regularly scheduled for 3:00 pm every last Monday of the month. To join, you may register through this link https://bit.ly/3EocEmD. Subscription to the entire iStories webinar series is also possible through the same form. 

 

To learn more about VISSER, please visit https://ttbdo.up.edu.ph/technology/visser/ 

 

For inquiries about iStories, please message adride_staff@science.upd.edu.ph 

 

For interview requests and other media concerns, please contact media@science.upd.edu.ph 

UP Scientists feted for pioneering genomics work

UP Scientists feted for pioneering genomics work

Published: April 28, 2023

By: Eunice Jean C. Patron

(From L-R) PGC Executive Director Dr. Cynthia Saloma, DOST Undersecretary Dr. Leah Buendia, DOST Secretary Dr. Renato Solidum, DOH Director of Epidemiology Bureau Dr. Alethea De Guzman, and DA Biotech Program Office Director Dr. Claro Mingala discuss the latest developments in Philippine genomics. (Photo credit: Shedy Masayon, UPD-CS)

From shedding light on mythological creatures to helping fight crime, the Philippine-led study of the basic building blocks of life has come a very long way. Ever since the inception of the country’s genomics program in 2009, scientists from the University of the Philippines Diliman – College of Science (UPD-CS) have been advancing the country’s genomics research in many surprising ways.

  

UPD-CS scientists lead the way 

 

Major outbreaks worldwide, such as dengue, SARS, and H1N1, brought the Philippines to realize the vital role of genomic research in predicting, diagnosing, and treating diseases before they spread to a greater degree. 

 

In the same year that the Department of Science and Technology (DOST) set the country’s genomics agenda, UP established the Philippine Genome Center (PGC), which aims to improve the

quality of the lives of Filipinos through genomics-focused multidisciplinary research. PGC was founded by four scientists, two of whom are from the UPD-CS: Dr. Gisela Concepcion of the Marine Science Institute (MSI) and Dr. Cynthia Saloma of the National Institute of Molecular Biology and Biotechnology (NIMBB), who also currently serves as the Center’s Executive Director. 

 

UPD-CS scientists also helm the PGC’s Executive Committee: Institute of Biology’s (IB’s) Dr. Neil Andrew Bascos, Director of the Protein, Proteomics, and Metabolomics Facility, and Dr. Michael Velarde, Director of the Biobank Core Facility; and Natural Science Research Institute’s (NSRI’s) Dr. Maria Corazon De Ungria, Director of Biodiversity, Ethnicity, and Forensics. 

 

Genomics in justice, mythology, and beyond 

 

In DOST’s recent press conference, “From Labs to Lives: Impact of DOST-led Genomics Program in PH,” held on April 14 at the PGC, UPD-CS scientists presented and discussed the significant milestones and progress that the Philippines’ genomics program has achieved over the last decade. 

 

In particular, Dr. De Ungria showcased the NSRI DNA Analysis Laboratory’s locally-developed sexual assault investigation kit (SAIK) that doctors can use to facilitate justice for victims. The event also highlighted advances in understanding and testing for dystonia parkinsonism, a rare genetic disease thought to be the basis for the “aswang” creatures of Philippine mythology. The speakers also touched on new studies in improving the breed and stock of Philippine cows implemented by the Philippine Carabao Center. 

 

The event was capped by the unveiling of the PGC’s new Protein, Proteomics, and Metabolomics Facility (PPMF) that will enable the Center to further its research into the effects and end-products of genes’ functions in the body. 

 

Filipino researchers have vastly expanded genomics applications in health care in the Philippines in various ways. Through their pioneering research studies and contribution to the genomics program of the country, UPD-CS scientists continue to use science for national progress, embodying UP’s commitment to serving the Filipino people. 

 

For interview requests and other concerns, please contact media@science.upd.edu.ph.

Researchers urge oil spill cleanup amid calm weather

Researchers urge oil spill cleanup amid calm weather

Published: March 28, 2023

By: Timothy James M. Dimacali

Scientists from the University of the Philippines – Diliman Marine Science Institute (UPD-CS MSI) have noted a “window of opportunity” to step up efforts to clean up the oil spill from the MT Princess Empress tanker that sank off Naujan, Occidental Mindoro, last February 28.

 

 

“Weaker winds and calmer seas allow for larger oil slicks to form because of less disturbance from waves,” the researchers noted in their latest update. Satellite data from the US National Oceanographic and Atmospheric Administration (NOAA) as of March 21 showed that the floating oil had accumulated into a 37.84-square-kilometer slick—”larger than Las Piñas,” the scientists noted. 

 

The accumulated oil, along with the improved weather, may be a boon to cleanup efforts: “Calmer seas and larger slicks should be taken as an opportunity to collect the oil in slicks near the sunken tanker using booms and skimmers and ramp up cleanup efforts to prevent the oil from spreading further,” the UPD-CS MSI said.

 

The researchers also warned that, with the seasonal weakening of the Amihan Northeast Monsoon, the subsequent strengthening of  easterly winds may push the oil further westward through the Verde Island Passage (VIP), one of the most biodiverse regions in the world and home to thousands of unique species. With some of the highest concentrations of coastal fishes, corals, crustaceans, molluscs, seagrasses, and mangroves worldwide, the Passage is the main source of food and livelihood for millions of Filipinos.

 

For the full update and for notifications of new developments, please Like and subscribe to https://www.facebook.com/upmarinescienceinstitute 

 

The UPD-CS MSI is also asking the public for help in monitoring the oil spill. The public is encouraged to contribute geotagged images of sightings of the MT Princess Empress oil spill through this form: https://bit.ly/MTPE_GPS. The use of a GPS-enabled phone and a GPS camera app such as “GPS Map Camera” (available on Google Play and the Apple Store) are recommended so that geotag location data can be preserved. 

 

For interview requests and other media concerns, please contact media@science.upd.edu.ph 

Pinoy inventor jumpstarts monthly innovation forum

Pinoy inventor jumpstarts monthly innovation forum

Published: March 27, 2023
By: Maria Asheidee M. Masayon

Inventors revolutionize the world because they often see in a different light—sometimes literally so, as in the case of this Filipino scientist-entrepreneur.

Filipino biochemist and entrepreneur Dr. Carlito Lebrilla in his element. (Photo credit: Gregory Urquiaga, UCDavis)

A distinguished professor and biochemist, Dr. Carlito Lebrilla of the University of California, Davis (UC Davis) is also a corresponding member of the National Academy of Science and Technology (NAST). He will be highlighting his research on mass spectrometry and the fundamentals of innovation for startup companies at the free inaugural iStories webinar hosted by the University of the Philippines Diliman College of Science (UPD-CS) this coming March 27.

 

A business born from mass spectrometry

 

Dr. Lebrilla’s research is focused on understanding fundamental processes in the ionization, fragmentation, and detection of ions. This enabled him to build a complex Fourier transform ion cyclotron resonance (FTICR) mass spectrometer that marked the start of  a research and teaching career centered on mass spectrometry.

 

Mass spectrometry is an analytical technique used to identify and quantify compounds, and determine structure and chemical properties of molecules via molecular weight determination. Chemists can use a mass spectrometer to ionize a molecular compound in gaseous form, sort the fragments, and then identify the molecule fragments based on their molecular weights. Applications of mass spectrometry include determination of rock ages, biochemical evolution of the Earth, and space explorations.

 

In Dr. Lebrilla’s case, his work on mass spectrometry helped him transition into the biomedical field that led him to develop methods for characterizing glycoconjugates—the biochemicals that contain carbohydrates bonded to some other compounds such as protein and lipid—in cells, animals, and humans. 

 

Dr. Lebrilla’s further research and discoveries in mass spectrometry have led to several patents and the founding of at least five companies. “I realized there were so many problems that mass spectrometry can solve in food, in health, and even in basic fundamental biological issues. I just kept finding new ideas there, which really appealed to me,” he says in one interview with Journal of the American Society for Mass Spectronomy.

 

iStories: a monthly series on innovation

 

iStories is one of UPD-CS’s initiatives to lead more researchers and students to adopt the perception of nation-building through science, according to Dr. Ricky B. Nellas, the Associate Dean for Research, Innovation, Development, and Enterprise (ADRIDE) of the College of Science.

 

“Innovations, especially recent advances in the fields of data science and breakthroughs in technology, have accelerated our knowledge on relevant fields of science such as disease biology, artificial intelligence, and the knowledge-research-product pipeline. It is only paramount for us, especially young scientists, to be up to speed with current advances in science and technology. We hope that the iStories webinar series would motivate Filipino scientists to forge new collaborations in order to solve relevant and neglected local and worldwide problems, through innovation-centric research.” he explained.

 

iStories is a free webinar series with innovation-themed lectures, storytelling, and activities featuring local and international scientists. The initiative is aimed at igniting the creativity and inventiveness of young scientists not just from the College of Science, but from other institutes inside and outside UP.

 

“We started this initiative to showcase the different paths towards scientific innovations that can be emulated by our researchers and students in order to contribute to nation building,” says CS Innovation Team Head, Dr. Lerrie Ann Ipulan-Colet. The team is composed of innovation representatives from nine institutes under the UPD-CS.

 

iStories is scheduled for 3:00 pm every last Monday of the month.

 

Interested participants can register to the webinar via Zoom through filling out this online form: bit.ly/3EocEmD. Subscription to the entire iStories webinar is also possible through the same form. 

 

For interview requests and other concerns, please contact media@science.upd.edu.ph

References:

Brenner, A. & Simpson, H. (2021). Faces of Mass Spectrometry/Carlito Lebrilla. J. Am. Soc. Mass Spectrom. 2021, 32, 6, 1275–1277 https://doi.org/10.1021/jasms.1c00116

Irreplaceable marine resources of Verde Island Passageunder threat from oil spill

Irreplaceable marine resources of Verde Island Passage under threat from oil spill

Published: March 27, 2023

By: Timothy James M. Dimacali

The priceless marine resources and famously pristine beaches of the Verde Island Passage (VIP)  in the Southern Tagalog region remain under threat from swaths of  thick black oil from the MT Princess Empress tanker that sank off Naujan, Occidental Mindoro, last February 28.


Located between Batangas and Mindoro, the VIP is one of the most biodiverse regions in the world, home to thousands of unique species. With some of the highest concentrations of coastal fishes, corals, crustaceans, molluscs, seagrasses, and mangroves worldwide, it is the main source of food and livelihood for over seven million people. The area also encompasses Puerto Galera, whose white sand beaches are internationally-acclaimed tourist destinations that are another vital source of revenue for local communities.

Thick black oil has been found floating off the coast of Baco Chico Island near Calapan City, Oriental Mindoro. (Photo credit: Marion Cepillo, Blue Alliance Key Ocean Defender (BAKOD), Blue Alliance)

Experts from the University of the Philippines – Diliman College of Science Marine Science Institute (UPD-CS MSI) have been working closely around the clock with the Department of Environment and Natural Resources (DENR) and the Philippine Coast Guard (PCG) alongside other universities, government agencies, and stakeholders in a race to address the oil spill and stop it from spreading.


“The VIP is home to endangered and threatened species including the critically endangered hawksbill turtle, whale sharks, manta rays, dugongs, humphead wrasses, giant groupers, and giant clams,” the UPD-CS MSI said in an update. “Damage from the oil spill may affect biodiversity (including endemic species only found in the Philippines as well as species yet to be discovered), tourism revenues, and food security in the area,” they added.

The UPD-CS MSI’s forecast model for the week of March 17-26, 2023, shows that the MT Princess Empress oil spill may spread across the Verde Island Passage. Shown in the image are the possible trajectories for March 24. (Photo credit: UPD-CS MSI)

The UPD-CS MSI’s latest bulletin references a NOAA/NESDIS report based on satellite data which shows that oil was still leaking out of the sunken vessel as of March 19 and the visible oil slick is extending northwest towards the VIP.  

 

“The Verde Island Passage represents a large portion of the country’s marine biodiversity, and is a vital resource for millions of people, past and present,” said UPD-CS MSI Associate Professor Irene Rodriguez. “If we work together, we can still hopefully safeguard it for future generations to come.”

 

The UPD-CS MSI is asking the public for help in monitoring the oil spill. The public is encouraged to contribute geotagged images of sightings of the MT Princess Empress oil spill through this form: https://bit.ly/MTPE_GPS. The use of a GPS-enabled phone and a GPS camera app such as “GPS Map Camera” (available on Google Play and the Apple Store) are recommended so that geotag location data can be preserved. 

 

For interview requests and other media concerns, please contact media@science.upd.edu.ph 

Citizens’ photos of oil spill can help marine scientists save our seas

Citizens’ photos of oil spill can help marine scientists save our seas

Published: March 21, 2023

By: Timothy James M. Dimacali

Researchers are banking on Filipinos’ inherent love of photography and social media, bringing everyone together through collaborative “citizen science” to help save the country’s precious marine resources from the ravages of a recent disastrous oil spill.

The public is encouraged to send photos of the MT Princess Empress oil spill, along with a description and location to https://bit.ly/MTPE_GPS. Scientists can use this information to improve their understanding of the disaster and to make better forecast models. (Photo credit: UPD-CS SciComm)

The University of the Philippines – Diliman Marine Science Institute (UPD-CS MSI)  is rallying the public to use their mobile phones to help get a better idea of the extent of the oil spill from the tanker MT Princess Empress, which sank last February 28 off the coast of Naujan, Occidental Mindoro.

 

The simple act of taking a photo and uploading it along with the time and location will be used by the researchers as starting points for their forecast models, complemented by data from other sources including satellite images and computer simulations. (The submission form can be found here: https://bit.ly/MTPE_GPS)

 

“It’s as easy as uploading your favorite photo to social media,” said UPD-CS MSI Associate Professor Irene Rodriguez. “We need continuous monitoring for the presence of oil along the coasts to inform our models. All you have to do is send us your photo of the oil spill, along with when and where the picture was taken.”

A sample photograph from a concerned citizen pointing to spots of oil on a beach. The photographer also volunteered when and where the photo was taken, to help scientists develop more accurate forecasts. (Photo credit: Denmark Recamora / Blue Alliance)

The UPD-CS MSI’s team of experts has been working closely around the clock with the Department of Environment and Natural Resources (DENR) and the Philippine Coast Guard (PCG) alongside other universities, government agencies, and stakeholders in a race to address the MT Princess Empress oil spill and stop it from spreading.


Such public-sourced initiatives, often called “citizen science” and “citizen journalism,” are regularly used around the world to tap into the local knowledge of people on the ground to help build up a better understanding of oftentimes complex, large-scale phenomena.

 

The US Geological Survey’s (USGS’s) “Did You Feel It?”, for example, aggregates public responses and social media mentions to assess and understand the impact of recent earthquakes.  National Geographic Magazine also lists several citizen science initiatives in which even gradeschool kids can participate, from reef monitoring to space exploration.

 

Meanwhile, citizen journalism has long been a staple of online reportage in the Philippines as far back as 2009, when local news websites had to rely heavily on social media posts for updates on the aftermath of Typhoon Ondoy.


The public is encouraged to contribute geotagged images of the MT Princess Empress oil spill through this form: https://bit.ly/MTPE_GPS. The use of a GPS-enabled phone and a GPS camera app such as “GPS Map Camera” (available on Google Play and the Apple Store) are recommended so that geotag location data can be preserved. 


For interview requests and other media concerns, please contact media@science.upd.edu.ph