UP physicists improve PHL’s disaster response with network science

UP physicists improve PHL’s disaster response with network science

Published: December 6, 2023

By: Harvey L. Sapigao

UP scientists are bringing an almost 300-year-old math discipline to life-saving relevance in the 21st Century, paving the way for better and more efficient relief operations in response to typhoons.

A model of Visayas’ transport network system, showing connections between major roads (red lines), sea routes (blue lines), seaports (blue dots), and food hubs (green icons). (Photo credit: Peralta JCA et al. 2023. Transport Network Efficiency during Typhoon Relief Operations. Philipp J Sci 152(S1): p. 188. )

First formally described in the early 1700s by the Swiss mathematician and physicist Leonhard Euler, the discipline now known as “network science” was earlier applied to the question of whether or not it was possible to walk through the European city of Königsberg by crossing all of its bridges only once—a math puzzle known as “The Seven Bridges of Königsberg”. 

 

Using network science for disaster relief

 

Now, as UP scientists have shown, this powerful branch of mathematics can be used to improve disaster relief efforts after a typhoon. In network science, lines that connect two points are called edges, while the points at which the lines intersect are called nodes. Together, edges and nodes make up a graph, which can be applied to a variety of modeling applications including disaster relief.

 

Dr. May T. Lim and Dr. Reinabelle C. Reyes of the UP Diliman National Institute of Physics (UP-CS NIP), with independent researcher JC Albert C. Peralta, used these concepts to model transport networks: by representing roads and sea routes as edges and the intersections between roads and sea ports as nodes, they were able to calculate the best ways to distribute relief goods. 

 

To simulate how relief operations move through different towns and districts, the researchers first pinpointed the regional food hubs from where relief packages are first received. They then simulated the relief packages moving outwards from these hubs to the edges and nodes, like water flowing through a network of pipes.  As part of their model, they also assigned each edge with a travel time, or the time it takes for a vehicle to traverse the road segment or sea route. This allowed them to calculate how long it would take for relief to reach different destinations.

 

Visayas: Proof of concept

 

The researchers tested their model on the Visayas region using geographic data from Google Maps, OpenStreetMap, and other publicly-accessible sources. Their model showed that Region 8, particularly in Northern and Eastern Samar, is the most vulnerable to relief delivery delays, taking as much as 12 hours for relief packages to arrive from the food hubs to these districts.

Relief delivery delays in Visayas transport network system when no connections are damaged. Region 8 is the most vulnerable to delays. (Photo credit: JCA. C. Peralta)

The researchers then simulated how typhoon damages affect relief operations, by randomly removing nodes to mimic impassable roads. Their simulation of the Visayas transport network revealed the extent of its vulnerability. Using the path of Typhoon Yolanda (Haiyan) as example, when even just 1% of the total nodes became inaccessible, 30 out of 251 towns became disconnected from the main network. More worryingly, almost all towns in the region became inaccessible when only just 5% of all nodes were shut down.

 

“We emphasize the need for a more decentralized and proactive form of relief logistics such as prepositioning relief goods, especially in or nearer to towns most vulnerable to disconnection,” the researchers cautioned.

 

Nationwide applicability

 

Although the model was only tested on the Visayas transport network system, the researchers underscored its potential application to all network systems in the Philippines. To showcase this usefulness, they made a prototype app that offers a user-friendly approach for the public. Currently, only the Visayas network system is available, but more transport networks are expected to be available as more data is brought into the model. They also said that the model’s accuracy and usefulness could be improved by using data based on actual rather than hypothetical damage.

 

The UP physicists’ work demonstrates how network science can aid in disaster response and preparedness. “It is our hope that policymakers will harness this potential for informed decision-making, strategic cost-benefit analysis for infrastructure investments, and effective data-driven transportation planning to enhance resilience in the face of future disasters,” the researchers concluded.

 

For interview requests and other concerns, please contact media@science.upd.edu.ph

 

References:

Peralta JCA. C. et al. 2023. Transport Network Efficiency during Typhoon Relief Operations. Philipp J Sci 152(S1): 185–195.

Pinoy inventor investigates abaca spacesuits and other nanotech innovations

Pinoy inventor investigates abaca spacesuits and other nanotech innovations

Published: November 20, 2023

By: Harvey L. Sapigao

Nanotechnology is a bustling field that opens the door to innovation across a wide variety of industries, from fashion and clothing to health and wellness. With this in mind, Dr. Gil Nonato Santos launched the iNano Research Facility in 2006.

 

iNano aims to provide nanotech-related services to academic institutions and industries, from manufacturing nanoparticles to nano-coating materials. Its diverse range of projects includes an abaca fabric coated with nanocomposites that can be used for spacesuits. Another project is focused on detecting lung diseases such as active tuberculosis, which affects 10 million people worldwide.

Dr. Gil Nonato Santos, head of DLSU’s iNano Research Facility, demonstrates a cost-effective tuberculosis test that uses nanotechnology to detect telltale compounds in a patient’s breath. (Photo credit: Dr. Gil Nonato Santos)

Dr. Santos  received his doctorate from the University of the Philippines – Diliman National Institute of Physics (UPD-CS NIP). He is currently a full professor at De La Salle University – Laguna (DLSU-Laguna) and a visiting professor at Osaka University.

 

Based out of DLSU-Laguna, iNano has collaborations with institutions and companies across the globe, including a prestigious partnership with Integrated Microelectronics Inc. (IMI), a global company that manufactures electronics and semiconductor supplies, and support from USAID. iNano also has collaborations with the Lung Center of the Philippines and National Taiwan University.

 

More of iNano’s achievements and goals will be discussed by Dr. Santos at the next iStories session on Monday, November 20, at 4:00 PM. He will give his talk at the CS Admin Auditorium and will also be live streamed on Zoom. To join, you may register through this link: https://bit.ly/iStories6 

 

iStories is a series of monthly innovation-themed talks, storytelling, and activities featuring local and international scientists. The initiative aims to ignite the creativity and inventiveness of young scientists not just from UPD-CS but also from other institutes inside and outside of UP.

 

For inquiries about iStories, please message adride_staff@science.upd.edu.ph 

 

For interview requests and other media concerns, please contact media@science.upd.edu.ph

UP geologists sweep 2023 PRC Licensure Exam

UP geologists sweep 2023 PRC Licensure Exam

Published: November 17, 2023

By: Harvey L. Sapigao

All ten topnotchers of the Philippine Regulation Commission’s (PRC’s) recently-conducted annual Geologists Licensure Exam are from the UP Diliman College of Science National Institute of Geological Sciences (UPD-CS NIGS).

UPD-CS NIGS was also the overall top-performing school, with 48 of 52 examinees having passed the licensure exam—a passing rate of 92.31% for the Institute. In comparison, the total passing rate for all 351 examinees from across the country was 47.01%.


The PRC Geologists Licensure Exam was computer-based, and held online from November 13 to 15, 2023.


Pursuant to Republic Act 10166, also known as the Geology Profession Act of 2012, the PRC Geology Licensure is a requirement for any individual who wants to practice geology as a profession in the Philippines.

 

For interview requests and other concerns, please contact media@science.upd.edu.ph.

UP scientist’s novel tech empowers rural fisherfolk

UP scientist’s novel tech empowers rural fisherfolk

Published: November 9, 2023

By: Timothy James M. Dimacali

Innovative data-driven technologies are empowering Filipino coastal communities by enabling them to make better informed decisions on when and how to utilize marine resources. 

 

An advocate of sustainable fishing practices, Dr. Aletta Concepcion T. Yñiguez of the UP Diliman College of Science’s Marine Science Institute (UPD-CS MSI) has been working closely with small-scale fishers and government agencies to help rural fisherfolk with technologies developed by UP scientists.

Dr. Yñiguez holds a SensPak tube, developed in collaboration with the National Institute of Physics, off the coast of Bolinao in June 2021. Once lowered in the water, such devices can help scientists and fisherfolk monitor the health of the marine environment almost in real time. (Photo credit: UPD-CS MSI DOST HABHazard Program)

Yñiguez collaborated closely with an interdisciplinary team of researchers from the UP Diliman College of Science’s National Institute of Physics (NIP), led by Dr. Giovanni Tapang,  to create compact sensor arrays that fit neatly into an ordinary PVC tube. Dubbed SensPak, the devices can monitor environmental conditions and send this valuable data in real time to scientists, fisherfolk, and decision makers for assessment and action.

 

She and her fellow MSI researchers also created ARAICoBeH (A Rapid Assessment Instrument for Coastal Benthic Habitats), an inexpensive tool for taking underwater photos of endangered areas such as coral reefs without needing to dive. She also spearheaded HABHub (Harmful Algal Bloom Hub), an online platform that facilitates the detection and reporting of algal blooms, which could threaten both the lives and livelihoods of affected fisherfolk. 

 

HABHub utilizes robust early-warning systems that allow for more proactive mitigation and enhanced understanding of HAB phenomena. HABHub also makes use of the Automated Water Quality Monitoring System (AWQMS) developed by the MSI’s Dr. Cesar Villanoy, Dr. Charina Amedo-Repollo, and Rachel Francisco, which continually looks at the temperature, salinity, dissolved oxygen and amount of chlorophyll in the water.

 

These and other innovations and insights from Dr. Yñiguez were the focus of a recent iStories webinar, hosted by the UPD-CS. 

 

“To ensure the sustainable utilization and management of ocean resources, it is critical that observational, monitoring and decision-support tools are in place to provide concrete, science-based information and management. But the technologies, tools and capacity for these are sorely lacking,” Dr. Yñiguez said at the event. 

 

“Our present efforts help bridge this gap through interdisciplinary collaborations to develop cost-effective sensors that automate ocean observation, building ocean data repositories and models for understanding, forecasting and decision-support,” she added.

 

For her work, Dr. Yñiguez was bestowed The Outstanding Women in Nation’s Service (TOWNS) award in 2022. Given by the TOWNS Foundation, Inc., the prestigious award honors Filipinas 21 to 45 years old who have contributed greatly to Philippine society in their chosen fields.

 

iStories is a series of monthly innovation-themed talks, storytelling, and activities featuring local and international scientists. The initiative aims to ignite the creativity and inventiveness of young scientists not just from UPD-CS but also from other institutes inside and outside of UP.

 

For inquiries about iStories, please message adride_staff@science.upd.edu.ph 

 

For interview requests and other media concerns, please contact media@science.upd.edu.ph  

4th Graduate Student Research Conference

4th Graduate Student Research Conference

Save the Date! 

Join us at the 4th Graduate Student Research Conference on November 13, 2023, at the CS Admin Building Auditorium! 

Get ready to be inspired by the innovative research and groundbreaking ideas of our talented graduate students!

UPD-CS celebrates 40 years with Science Film Festival in partnership with Goethe Institut

UPD-CS celebrates 40 years with Science Film Festival in partnership with Goethe Institut

Published: October 24, 2023

By: Eunice Jean C. Patron

In celebration of its 40th Anniversary, the UP Diliman College of Science in partnership with the Goethe-Institut is providing free university and public screenings of the Philippine Science Film Festival Philippines 2023.

 

The two days of screenings (see schedule below) will kick off on the College’s Anniversary on Thursday, October 26, and will be held at the UPD-CS Institute of Biology Auditorium at the National Science Complex, UP Diliman. Students and members of the public are free to attend but may be asked to show a valid university or government ID for security purposes.

 

Founded in 1983, the UP Diliman College of Science is the country’s premier generator of new scientific knowledge and the leading producer of PhD and MS graduates in the basic and applied sciences and mathematics. In 2023 alone, the College graduated 19 PhDs, the most in its four-decade history.

 

The Science Film Festival Philippines, now in its 14th year, will be held from October 25 to December 01, 2023. Celebrated as one of the biggest and longest-running science events in the Philippines, the festival offers a roster of 34 science-related films in support of the United Nations Decade on Ecosystem Restoration.

FILM SCHEDULES

 

DAY 1 (October 26, Thursday)

 

Short Film Entries

10:00 AM – 12:00 PM

Ranging in length from 6 minutes to 10 minutes, these brief documentaries cover a range of topics from “The Forgotten Forest” to “Redesigning the Wheel”. 

 

Powering Puerto Rico

1:00 PM – 2:00 PM

This is a film about a Northeastern University professor’s innovative solution to provide affordable renewable power to Puerto Rico using reconditioned hybrid car batteries after Hurricane Maria left millions without electricity.

 

A League of Extraordinary Makers: Rise of the Makers

2:00 PM – 3:00 PM

A documentary exploring the rise of the Maker Movement, highlighting individuals who create, innovate, and hack a wide range of products and technologies, from everyday items to groundbreaking innovations, as they become the heroes of this movement.

 

Kelp – South Africa’s Golden Forests | The Last Seed

3:00 PM – 5:00 PM

“Kelp” explores the hidden beauty and importance of the Great African Seaforest on South Africa’s Western coastline, emphasizing its contributions to livelihoods, conservation, and cultural heritage while advocating for its sustainable management in the face of climate change.

 

“The Last Seed” is a close-up look at the challenges facing food and agriculture in 21st-century Africa, with a central focus on the control of seeds, while raising questions about lost values and the search for sustainable solutions, using music, dance, visuals, and the experiences of small-scale food producers and experts.

 

DAY 2 (October 27, Friday)

 

Short Film Entries

10:00 AM – 12:00 PM

Ranging in length from 6 minutes to 10 minutes, these brief documentaries cover a range of topics from “The Forgotten Forest” to “Redesigning the Wheel”.

 

Duty of Care – The Climate Trials

1:00 PM – 2:00 PM

Lawyer Roger Cox’s pioneering legal actions against the Dutch government and Shell resulted in landmark climate rulings that sparked a global wave of climate cases, with a cast of characters and experts exploring the principles of justice in addressing humanity’s greatest climate challenge.

 

Gardening Marine Forests: A Hands-on Approach to Restoration | Wild Hope – Coffee for Water

2:00 PM – 3:00 PM

In “Gardening Marine Forests,” two marine scientists explore how a hands-on approach to marine restoration is reviving kelp forests in South Korea by emphasizing the deep connection between people and the ocean, showcasing inspiring examples of community involvement and sustainable practices.

 

“Coffee for Water” showcases the inspiring change-makers who are actively restoring and safeguarding the environment. With a focus on growing coffee to preserve Mozambican rainforests, this film emphasizes the power of local actions and offers a hopeful perspective.

 

Forest Partners

3:00 PM – 4:00 PM

This documentary explores the symbiotic relationship between public and private organizations, local communities, and tropical forests, showcasing innovative solutions that blend technology and traditional knowledge to protect and sustainably manage these landscapes, with a focus on success stories from South America, Africa, and Asia.


For further inquiries, please message media@science.upd.edu.ph

UP scientists make composite flowers to fight cancer-causing dyes

UP scientists make composite flowers to fight cancer-causing dyes

Published: October 6, 2023

By: Timothy James M. Dimacali

Scientists from the University of the Philippines – Diliman College of Science (UPD-CS) have simplified the process of making microscopic composite flowers that can neutralize the highly carcinogenic azo dyes widely used in food, clothes, and medicines.

Seen under an electron microscope, these nanoflowers—each one less than half the width of a human hair—feature a gold center surrounded by ‘petals’ made from a copper compound. This nanomaterial has been found to facilitate the degradation of widely used but highly toxic azo dyes. (Photo credit: Wiley-VCH; see reference below)

Azo dyes are synthetic colorants that come in a variety of vivid colors, including red, orange, and yellow. They were commonly used in everything from denim and leather to soft drinks and jams. However, it was discovered that some azo dyes are closely linked to bladder cancer. Moreover, the regulated use and safe disposal of these carcinogenic azo dyes remain a global concern.

 

A new material that may help to safely degrade azo dyes was recently investigated by Enrico Daniel R. Legaspi, Prof. Michelle D. Regulacio, and Leila Andrea E. Pineda from the Institute of Chemistry (UPD-CS IC); Luce Vida A. Sayson of the Material Science and Engineering Program (UPD-CS MSEP); and colleagues from Singapore’s Agency for Science, Technology, and Research (A*STAR).

 

The nanocomposite material exhibits a flower-like structure, each just around 50 nanometers in diameter or less than half the width of a human hair, with a gold (Au) center surrounded by petal-like copper oxide (Cu2O) crystals. It was found that this configuration greatly enhances Cu2O’s ability to catalyze the breakdown of azo dyes into harmless chemicals.

 

The researchers said that this is the first time that this flower-like configuration has been synthesized in a single manufacturing setup, thereby paving the way for easier and more affordable production.

 

“The one-pot synthesis protocol presented in this work is a more straightforward and less laborious approach that does not require a separate pre-synthesis step. Furthermore, the synthesis can be conveniently performed at ambient conditions using nontoxic reagents,” the researchers explained in their paper.

 

“The uniquely designed Au-Cu2O nanoflowers were found to effectively catalyze the borohydride-mediated degradation of synthetic azo dyes. The hybrid exhibited superior catalytic activity relative to pristine Cu2O, underscoring the significance of creating a nanocomposite,” they added.

 

For interview requests and other concerns, please contact media@science.upd.edu.ph.

 

References:
Legaspi, E. D. R., Regulacio, M. D., Pineda, L. A. E., Sayson, L. V. A., Jiang, W., Heng, J. Z. X., Wu, W., & Ye, E. (2023). Facile One‐Pot Synthesis of Uniquely Designed Au−Cu2O Nanocomposites for Effective Catalytic Degradation of Azo Dyes. ChemistrySelect, 8(25), e202300904. https://doi.org/10.1002/slct.202300904

Bee nests inspire UP scientists to make new ‘smart’ materials

Bee nests inspire UP scientists to make new 'smart' materials

Published: September 25, 2023

By: Timothy James M. Dimacali

Bee nests are a marvel of natural engineering that have inspired human engineers and inventors for centuries. Now, Filipino researchers are investigating ways to create porous materials that not only mimic the strengths of beehives but are also able to selectively trap microparticles. These new materials have potential uses in everything from water purifiers to medical sensors.

The researchers from the UPD-CS Institute of Chemistry include the paper’s authors (counter-clockwise, from middle left) Jose Jesus Gayosa, Dr. Susan Arco, Gillian Kathryn Yap, and Marco Laurence Budlayan. Not in photo is fellow UP researcher and co-author, Jonathan Patricio. Also in photo (at back, L to R) are Leo Sabolboro and Miguel Karlo Santos. (Photo credit: Dr. Susan Arco)

Jonathan Patricio, Gillian Kathryn Yap, Jose Jesus Gayosa, and Dr. Susan Arco of the UP Diliman College of Science’s Institute of Chemistry (UPD-CS IC) and colleagues from the Ateneo de Manila University (ADMU) were able to control the physical properties of porous polyvinyl chloride (PVC) films by adjusting the drying temperature used in the manufacturing process.

 

The PVC is formed around droplets of water which, when they evaporate, leave a pattern of microscopic holes reminiscent of a bee’s nest. Such honeycomb structures have long been recognized for their engineering applications:

 

“One of the most interesting structures inspired by nature is the honeycomb pattern… Its unique properties and structure inspired the construction of light and robust aircraft and spacecraft, protection gear, panels, packaging, and cushioning because of an ability to absorb impact and energy,” the researchers explained in their paper.

 

“The repeating units of a honeycomb pattern can also effectively trap particles and impurities thus making them a promising structure for air and water filters,” they added.

The UP researchers investigated the difference in the honeycomb structure of PVC films that were dried at room temperature (a) and at temperatures above 80°C (b). (Photo credit: M. L. M. Budlayan)
Drying temperatures in the manufacturing process for PVC films affects the wall thickness and cell size of the films’ honeycomb structures. These PVC films have a wide range of potential uses. (Photo credit: M. L. M. Budlayan)

The researchers also explored the wettability of the various honeycomb PVC materials they created, as well as the potential of selectively trapping microparticles by subjecting the honeycomb to an electric charge.


The study “opens the possibility of integrating polymeric honeycomb structures into substrates used for microparticle trapping, sensing, and other related applications,” the researchers concluded.


For interview requests and other concerns, please contact media@science.upd.edu.ph


References:


Budlayan, M. L. M., Patricio, J. N., Yap, G. K. B., Gayosa, J. J. A., Arco, S. D., Diaz, J. M. A., & Guerrero, R. A. (2023). Honeycomb pattern formation on poly(Vinyl chloride) films: Electrically-driven microparticle trapping and the effect of drying temperature. Materials Research Express, 10(8), 085304. https://doi.org/10.1088/2053-1591/acefb1

Investigating the role of bird perches in reforestation

Investigating the role of bird perches in reforestation

Published: September 12, 2023

By: Timothy James M. Dimacali

Reforesting damaged forests is crucial for fighting climate change and protecting wildlife. One common way to do this is by planting trees, but this can be expensive and labor-intensive. A cheaper and more effective approach is Assisted Natural Regeneration (ANR), which can involve the use of bird perches to attract fruit-eating birds that can help spread tree seeds and speed up the natural regeneration of the forest.

A Philippine green pigeon (Treron axillaris) is seen eating a fig, the seeds of which will be dispersed the next time the bird defecates. Researchers are looking at the potential role of artificial and natural bird perches in this dispersal process towards restoring degraded forests.(Photo credit: Jelaine Lim Gan)

Researchers from the University of the Philippines – Diliman College of Science Institute of Biology (UPD-CS IB), the Norwegian Institute for Nature Research, and the UK’s Newcastle University aim to embark on a systematic review and meta analysis of previous studies and observations to figure out how well artificial and natural perches work in increasing seed dispersal and seedling growth on degraded areas.

 

“The results will synthesize available evidence on the topic, identify knowledge gaps we need filling to upscale the strategy, and inform their use in concert with other ANR strategies,” the researchers said in their paper. “The search strategy was informed through a literature scan and discussions with stakeholders and experts,” they added.

 

The meta study aims to see if perches help bring in more seeds and seedlings in terms of numbers and types. The researchers hope to learn how to use perches better and combine them with other strategies to bring damaged forests back to life.

 

The results of the meta study are expected to be available in 2024.

 

References:

Gan, J. L., Grainger, M. J., Shirley, M. D. F., & Pfeifer, M. (03 August 2023). How effective are perches in promoting bird-mediated seed dispersal for natural forest regeneration? A systematic review protocol. Environmental Evidence, 12(1), 15. https://doi.org/10.1186/s13750-023-00308-z

Beyond Einstein: Pinay physicist investigates exotic subtonic particles

Beyond Einstein: Pinay physicist investigates exotic subatomic particles

Published: September 5, 2023

By: Timothy James M. Dimacali

Building on Albert Einstein’s work, a Filipina physicist and an international team of researchers recently discovered that a special class of subatomic particles can be described using concepts from the famous scientist’s Theory of Relativity.

UPD-CS NIP associate professor Dr. Gennevieve Macam and her colleagues are working to understand the behavior of a relatively new subatomic particle called a Weyl fermion. (Photo credit: Dr. Gennevieve Macam)

UP Diliman College of Science National Institute of Physics (UPD-CS NIP) associate professor Dr. Gennevieve Macam and her colleagues were investigating Weyl fermions, exotic subatomic particles that are similar to electrons but have no mass. They found that the behavior of these particles can be understood by adapting Einstein’s ideas on causality.

 

Causality refers to how one event can directly lead to another event in a cause-and-effect relationship. Einstein took this idea further when he realized that nothing can travel faster than light. This led to the concept of “light cones,” which represent all the possible paths that light—or any signal moving at the speed of light—can take from a given event in space and time. Anything inside the light cone of an event could potentially be influenced by that event, while anything outside the light cone cannot be affected by it due to the limitation imposed by the speed of light. The outer boundary of this cone is called the “event horizon.”

 

Dr. Macam collaborated with Prof. Guoqing Chang of Nanyang Technological University and his team. They found that these concepts, which normally apply to space and time, could also be used to describe the behavior of Weyl fermions in terms of energy and momentum.

 

“Our work shows how Einstein’s equations can be adapted to describe quantum materials,” Dr. Macam said. “This paves the way to a better understanding of how the strange quantum world and our everyday reality are intertwined.”

 

Weyl fermions were first theorized by German physicist Hermann Weyl in 1929 but their existence was only proven almost a century later, in 2015. Due to their charged but massless nature, Weyl fermions may have future applications in electronics and computers.

 

References: 

Chiu, WC., Chang, G., Macam, G. et al. Causal structure of interacting Weyl fermions in condensed matter systems. Nat Commun 14, 2228 (2023). https://doi.org/10.1038/s41467-023-37931-w