UP Scientists’ Invention Could Lower Terahertz Antenna Device Cost

UP Scientists’ Invention Could Lower Terahertz Antenna Device Cost

Published: July 17, 2025
By: Eunice Jean C. Patron

Scientists from the University of the Philippines – Diliman College of Science (UPD-CS) have developed a new semiconductor structure that could lead to more affordable and reliable terahertz (THz) technology—used in applications ranging from medical imaging to high-speed wireless communication.

 

One of the goals in THz research is to make THz-Time Domain Spectroscopy (THz-TDS) widely usable; this invention addresses key technical and economic barriers to its adoption.

 

The Riber 32P MBE equipment that was used to grow the THz emitter comprising of p-InAs epitaxial layers over an InGaAs/GaAs superlattice over a GaAs buffer layer over a growth-interrupted GaAs region over an n-GaSb substrate. (Photo credit: Dr. Cyril Salang)

Dr. Cyril Salang of the UPD-CS Materials Science and Engineering Program (MSEP), together with Dr. Arnel Salvador, Dr. Armando Somintac, and Dr. Elmer Estacio of the UPD-CS National Institute of Physics (NIP), and Dr. Joselito Muldera of RIKEN—a national scientific research institute in Japan—have introduced a new design for semiconductor components. It features a substrate, a buffer layer, and an epitaxial layer— a thin crystal layer grown on top.

 

What makes their design unique is the use of a mismatched buffer layer—a material whose atomic structure (called lattice constant) differs significantly from both the substrate below and the epitaxial layer above. While such mismatches typically lead to defects or poor performance, the scientists’ invention surprisingly results in high-quality layers that perform just as well as, or even better than, traditional materials used in THz emitters.

 

The team added a growth-interrupted region and a superlattice—a structure made of alternating thin layers—to strengthen the adhesion between components despite the lattice mismatch. The p-type indium arsenide (p-InAs) layer was grown on top of a superlattice which was deposited on top of a main buffer layer over a growth-interrupted region over a more affordable gallium antimonide (n-GaSb) substrate. When tested, the invention delivered impressive results.

 

Its performance was comparable to traditional bulk materials when using a 0.80 μm laser, and even better with a 1.55 μm fiber laser—which is cheaper and more practical for mainstream use—making this invention a potential game-changer for THz-TDS systems.

 

Dr. Salang shared that it took 11 years from the initial idea in 2013 to the patent approval in 2024. “My paper was published in 2015, followed by an invention disclosure later that year. With support from the UP Diliman Office of the Vice Chancellor for Research and Development (OVCRD), the patent application was filed in February 2016 and was officially granted in 2024,” she said.

 

With their newly granted patent, Dr. Salang and her team are in a much stronger position to contribute to the growing terahertz industry. “Receiving a national patent means that the originality of our work is recognized. It encourages me to do further innovation,” she added.

 

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BELLA TAN SCHOLARSHIP

BELLA TAN SCHOLARSHIP

- 3 First-Year Undergraduate Student Slots

Benefits:
– a stipend of Thirty Thousand Pesos (PHP 30,000), with PHP 10,000 to be disbursed during the first month and PHP 5,000 each to be disbursed during the next four months of each semester for four (4) academic years.
 
Qualifications:
1. The applicant must be a Filipino citizen, a first-year, regular student of the University, and currently enrolled under any undergraduate degree program in the College of Science.
2. The applicant must be financially needy: that is, his/her parents’ or guardians’ combined annual gross income is not more than PHILIPPINE PESO: Five Hundred Thousand (Php 500,000) based on their combined income tax returns in the immediately preceding calendar year prior to application for this Grant.
3. The applicant should not be concurrently a recipient of any other study grant or assistance that provides cumulative benefits exceeding the equivalent of PHILIPPINE PESO: Ten Thousand (Php 10,000) in any month.
4. The applicant should not be employed in any manner and earning more than the cumulative equivalent of PHILIPPINE PESO: Ten Thousand (Php 10,000) in any month.
 
Terms of the Grant:
– The awardee shall finish all the requirements of his/her study program within the duration prescribed by the College.
– The Grant may be renewed every semester provided the awardee satisfies the above-stated application qualifications and the following:
1. The awardee must have earned a minimum cumulative general weighted average grade of “3.00” in all courses taken in the University, provided that the awardee was enrolled and passed in at least fifteen (15) credit units per semester.
2. The awardee must not have received any final grade lower than “3.00” or have an existing grade of “INC” or “Incomplete” before the awarding of the Grant or any payment of its benefits.
3. The awardee must not have any dropped/failed subjects including NSTP (National Service Training Program) and P.E. (Physical Education) subjects.
4. The awardee must have complied with and shall comply with all the rules of the College on academic performance (including the minimum academic load per semester, and the maximum residence rule).
5. The awardee must not have committed any act of misconduct with a corresponding corrective measure of more than one (1) week suspension, as certified by the Office for Student Ethics of the University, or its equivalent office.
6. The awardee must not shift to other degree programs, except when the College and the DONOR gives its prior written consent and provided that the new degree program is still within the UP Diliman College of Science.
 
Requirements:
1. Accomplished Scholarship Form
2. Latest Income Tax Return (ITR)
3. Letter of Intent addressed to College of Science Dean, Dr. Giovanni A. Tapang
 
Please submit the following requirements to adsapa_staff@science.upd.edu.ph
Deadline of Applications on July 30, 2025 (Wednesday)
 

Elusive ‘Birth of a Torus’ in Quantum Systems Observed For the First Time

Elusive ‘Birth of a Torus’ in Quantum Systems Observed For the First Time

Published: July 10, 2025
By: Harvey Sapigao

Computer simulation of the time crystal’s loop (left) and torus (right) representations in the phase space (Image credit: Dr. Jayson Cosme).

Imagine a very thin rubber band morphing into a donut. This transformation, known as the ‘birth of a torus’, is used to mathematically describe the behavior of systems undergoing transitions. While the birth of a torus is common in classical systems, it has only existed theoretically in quantum systems—until now. An international team led by UP physicist Dr. Jayson Cosme has experimentally observed this phenomenon in quantum systems for the first time, using lasers, mirrors, and time crystals.

 

Many repeating behaviors in nature can be described by shapes such as a rubber band or a donut. One example is the beating of the heart, which cycles between “lub” and “dub.” Scientists can visualize this cycle by drawing a two-dimensional loop in a mathematical space called the phase space. This loop represents all of the heart’s states: lub corresponds to one side of the loop, while dub corresponds to the other. This lub-dub loop captures the behavior of a stable heart, but when the beating becomes irregular, more complex shapes are needed to represent the behavior more accurately—like a donut, or more formally, a torus.

 

Quantum systems also exhibit repeating behaviors that can be mapped in the phase space. One such system is the time crystal, or ultra-cold atoms that switch back and forth between two states over time. Like the rhythm of a heartbeat, time crystals can be represented by a loop in the phase space. Physicists created the first time crystals in 2016 by shining a pulsating laser on ultra-cold atoms. The laser’s rhythmic pulses cause the atoms to cycle between two states.

 

In 2022, Dr. Cosme of the UP Diliman College of Science National Institute of Physics (UPD-CS NIP), together with physicists in Germany, showed that time crystals can form even without a pulsating laser. They sandwiched ultra-cold rubidium atoms between two highly reflective mirrors and directed a laser onto the setup. The mirrors repeatedly reflected the laser, effectively trapping it and forcing it to interact continuously with the rubidium atoms.

 

The team adjusted the laser’s brightness and observed how the atoms responded. They found that when the laser reached a specific intensity, the atoms began oscillating between two states, becoming time crystals. The physicists called it a “continuous time crystal,” marking the first experimental realization of its kind.

 

Now, using the same experimental setup and working with the same collaborators, the team has taken the idea even further. “In this new study, we showed that cranking up the intensity of light to even brighter or stronger levels will lead to another critical transition,” said Dr. Cosme.

 

When exposed to a stronger laser, the time crystal begins to behave in a way that can no longer be accurately described by a simple loop in the phase space. Instead of switching periodically between two states, it starts oscillating in an unstable, more complex manner. Its representation in the phase space transforms from a loop to a torus — the birth of a torus.

 

The time crystal’s extreme sensitivity to light made this transition difficult to observe. Still, the team’s cold atom experiment was exceptionally precise, allowing it to capture the transition for the first time in history. Their study is now published in the prestigious journal Physical Review Letters.

 

Beyond fundamental physics, the findings could pave the way for new kinds of ultra-sensitive light detectors. “The transition between loop and torus depends on the light intensity,” explained Dr. Cosme. “Below the critical point, it will be a loop, while above, it will be a torus. As such, a system operating close to this transition point can be used as a sensitive detector for light or electromagnetic fields.”


The team is now investigating whether bifurcations in quantum systems can be predicted before they occur. They also plan to use their experimental setup to explore other quantum phenomena, such as the Kibble-Zurek mechanism, which they examined in a paper published last year. “We’re quite excited about that one, and we hope we can share some exciting news about it soon,” concluded Dr. Cosme.

 

References:

Cosme, J. G., Kongkhambut, P., Bölian, A., Tuquero, R. J. L., Skulte, J., Mathey, L., Hemmerich, A., & Keßler, H. (2025). Torus bifurcation of a dissipative time crystal. Physical Review Letters, 134(22). https://doi.org/10.1103/physrevlett.134.223601

 

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Study Proposes Framework Integrating Architectural Design Standards into Urban Microbiome Research

Study Proposes Framework Integrating Architectural Design Standards into Urban Microbiome Research

Published: June 30, 2025
By: Eunice Jean C. Patron

Plate Count Agar (PCA) exposure plates showing microbial growth under natural ventilation with different window sizes (low, medium and high). (Photo credit: Ma. Beatrice Villoria)

Human-built environments, such as the spaces we live in, can influence our health through microbiomes—communities of microbes like bacteria and viruses. People have long been unconsciously influencing microbes through the way we design our built environments. With the right knowledge, we can intentionally shape these microbial communities to support better health—an idea currently explored by Filipino researchers in a recent study.

 

Pursuing interdisciplinary collaborations

 

Ma. Beatrice Villoria of De La Salle – College of Saint Benilde, also the owner of the thesis that started this research, collaborated with Vina Argayosa of the University of the Philippines – Diliman College of Science’s Natural Sciences Research Institute (UPD-CS NSRI), Angelo Rosalinas of Ove Arup & Partners Hong Kong Limited – Philippines Branch, Daniel Nichol Valerio of De La Salle University, Christian Lyle La Madrid of LLUID, and Michael Xavier Ticzon of Fundamental Design Experts—who come from diverse fields of expertise—to create a conceptual framework for translating microbial research into design tools for the urban built environment.

 

The study found that ventilation and the number of people in a space have a huge impact on the amount of indoor bacteria. A framework showing how microbial research can be done to produce data usable by architects and other designers for building design – similar to the experiments in the study- was developed by a team of architects, a microbiologist, and engineers led by Villoria, an architecture graduate.

 

“It started in my thesis, I looked for a microbiologist [Argayosa] who was willing to work on this idea, and the effort paid off,” Villoria shared. “Having different fields working together is a big help in our evolving society. So far, I’ve collaborated with people from the fields of architecture, microbiology, and engineering. For sure, there are other disciplines we need to work with to further develop the study.”

 

Application to existing building code

 

Building codes, such as the National Building Code of the Philippines, set standards for design and construction within a country. These standards typically take the local climate, site conditions, anthropometry, and many more into account. However, the impact of building design set by building codes on microbial presence has yet to be explored.

 

The researchers used the National Building Code of the Philippines, particularly its guidelines on the minimum habitable room, as the basis for their study. Three experiments were conducted in Metro Manila using passive air sampling—a method for collecting airborne bacteria and fungi—to measure bacterial and fungal counts under different conditions: ventilation, window size, and human presence. The findings were used to conceptually design an indoor space that considers microbial presence.

 

“How do we measure a healthy amount of microbes in a built environment? It would actually be good to define that. Hospitals and manufacturing sites follow certain standards based on the acceptable levels of microbes they should have. Now, it’s like we’re examining our daily lives with a more studied approach—especially as things become more urbanized,” Argayosa said.

 

Global relevance from a local study

 

Although the research was conducted in the Philippines, the methodology can be applied in other parts of the world. Since each country follows its own building codes and regulations, the framework can be adapted to different contexts—considering factors such as the country’s temperature and humidity. “Other countries have their own design standards that fit the needs of their country. In our case for example, our tropical climate has a different effect on humidity, temperature, which influences the types of microbes that grow here in our country,” Villoria added, saying that their team hopes that the findings of their study can serve as a reference point for international efforts to improve overall indoor environmental health.

 

Proposed conceptual framework for translating microbial research into usable design tools. (Photo credit: Villoria et. al., 2025)

Ongoing refinement of the framework

 

The work doesn’t stop at using the conceptual framework for a minimum habitable room; rather, the team encourages researchers from various fields to build on their data by including other types of room or space usage. “If people understood patterns between the built environment and microbes better, they can make more informed interventions later on,” Villoria explained. “We’ll need to start small—like on a micro level—so we can build up the data and form patterns. This conceptual framework can still be updated and then used on a much bigger scale like the zoning of cities which affect a bigger number of people.”

 

“We don’t realize it, but we’re actually surrounded by microbes. Our bodies have a lot of microbes, and so does everything around us. Just being aware that these microbes are in our surroundings is already a big deal,” Argayosa expounded. That’s why this study asks: is there something we can do in how we design our buildings, and what kind of impact would that have?”

 

The study, titled “Integrating building code to microbial count studies in urban built spaces with ventilation and human presence: a model,” is published in Frontiers in Built Environment, a journal that focuses on the development of sustainable methodologies for the design and management of resilient buildings and infrastructure.

 

References:

Villoria, M. B., Argayosa, V. B., Rosalinas, A. D., Valerio, D. N., La Madrid, C. L., & Ticzon, M. X. (2025). Integrating building code to microbial count studies in urban built spaces with ventilation and human presence: A model. Frontiers in Built Environment, 10. https://doi.org/10.3389/fbuil.2024.1517638

 

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UP Biologists Tumulong sa Pagtuklas ng Bagong Species ng Philippine Forest Mice sa Mindoro

UP Biologists Tumulong sa Pagtuklas ng Bagong Species ng Philippine Forest Mice sa Mindoro

Published: June 25, 2025
By: Rio Constantino
Translated by: Dr. Ian Kendrich C. Fontanilla

Mouse A: A. gracilirostris; mouse B: A. veluzi; mouse C: A. crinitus; mouse D: A. minor (Photo credit: Heaney et. al 2025)

Ang Mindoro ay nagsisilbing tahanan ng natatanging kasaganahan ng endemic mammalian wildlife na hindi matatagpuan saanman sa mundo. Kabilang dito ang sikat na tamaraw, ang Mindoro warty pig, at ang hamak na Mindoro shrew. Ngayon, may tatlo pang species ang idinagdag sa listahan, salamat sa bagong tuklas na mga Philippine forest mice—lahat kabilang sa genus ng Apomys.

 

Mula 2013 hanggang 2017, nangalap ang mga pangkat ng mga field biologist na pinamumunuan ng yumaong kilalang Filipino scientist na si Danilo Balete sa mga di gaanong napupuntahang kagubatan sa Mindoro. Sa kanilang mga ekspedisyon, napansin nila ang tatlong natatanging mga dagang gubat na kapansin-pansing naiiba sa isa pang kilalang endemic species sa isla, ang Apomys gracilirostris.

 

Nakipagtulungan si Balete kay Dr. Mariano Roy Duya at Melizar Duya ng UP Diliman College of Science Institute of Biology (UPD-CS IB), kasama ang mga biologist mula sa Estados Unidos, upang suriin ang mga gene, balahibo, at istruktura ng bungo ng mga dagang gubat na ito. Makalipas ang halos isang dekadang pagsusuri sa laboratoryo, kinumpirma ng pangkat na tiyak na mga bagong species ang tatlong daga: ang maliit na Apomys minor, ang may mabuhok na taingang A. crinitus, at A. veluzi, na ipinangalan bilang parangal sa yumaong Maria Josefa “Sweepea” Veluz, isang kilalang mammalogist ng National Museum of Natural History of the Philippines.

 

Lalong napataas ng pagkatuklas ang bilang ng mga endemic mammal sa Mindoro mula siyam hanggang labindalawa. Pinagtitibay din nito ang katayuan ng isla bilang isang natatanging evolutionary hotspot—na kinikilala ngayon bilang ang pinakamaliit na isla sa buong mundo na pinagganapan ng mammalian speciation.

 

Gayunpaman, hindi lamang Mindoro ang sentro ng biodiversity sa Pilipinas. Ang mga geographical characteristic na humubog sa natatanging wildlife nito ay matatagpuan din sa marami pang bahagi ng bansa. Ang Luzon, halimbawa, ay mayroon ding kahalintulad na kumplikadong geologic history at napakalawak na biodiversity. Ganoon din ang makikita sa ilang bahagi ng Mindanao. Ito ang dahilan kung bakit napakaraming biologist ang naaakit sa Pilipinas—at kung bakit marami rin ang nag-aalay ng kanilang mga karera sa pagtatanggol sa mga kagubatang nito.

 

Ang ginawang pag-aaral, na pinamagatang “Three new species of Philippine forest mice (Apomys, Muridae, Mammalia), members of a clade endemic to Mindoro Island,” ay nailathala sa journal na Zootaxa.

 

References:

Heaney, L.R., Balete, D.S., Duya, M.R.M., Duya, M.V., Kyriazis, C.C., Rickart, E.A., Steppan, S.J. & Rowsey, D.M. (2025) Three new species of Philippine forest mice (Apomys, Muridae, Mammalia), members of a clade endemic to Mindoro Island. Zootaxa, 5647 (1), 1–26. https://doi.org/10.11646/zootaxa.5647.1.1

 

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UP Biologists Help Discover New Philippine Forest Mice Species in Mindoro

UP Biologists Help Discover New Philippine Forest Mice Species in Mindoro

Published: June 24, 2025
By: Rio Constantino

Mouse A: A. gracilirostris; mouse B: A. veluzi; mouse C: A. crinitus; mouse D: A. minor (Photo credit: Heaney et. al 2025)

Mindoro is home to a unique bounty of endemic mammalian wildlife found nowhere else on Earth. This includes the famous tamaraw, the Mindoro warty pig, and the humble Mindoro shrew. Now, three more species are added to the list, thanks to the recent discovery of Philippine forest mice—all belonging to the Apomys genus.


From 2013 to 2017, teams of field biologists led by renowned Filipino scientist Dr. Danilo Balete surveyed relatively understudied forests of Mindoro. During their expeditions, they noticed three distinctive forest mice that looked noticeably different from the island’s known endemic species, Apomys gracilirostris.


Balete worked with Dr. Mariano Roy Duya and Melizar Duya of the UP Diliman College of Science Institute of Biology (UPD-CS IB), along with biologists from the United States, to analyze the genes, fur, and skull structures of forest mice. After nearly a decade of laboratory work, the team confirmed that the three mice are indeed new species: the tiny Apomys minor, the hairy-eared A. crinitus, and A. veluzi, named in honor of the late Maria Josefa “Sweepea” Veluz, a distinguished mammalogist of the National Museum of Natural History of the Philippines.


The discovery raises the number of endemic mammals on Mindoro from nine to twelve. It also cements the island’s status as a unique evolutionary hotspot—now recognized as the smallest known island where mammal speciation has taken place.


However, Mindoro is not the only center of biodiversity in the Philippines. The same geographic characteristics that shaped its unique wildlife can be found in many other parts of the country. Luzon, for instance, has a similarly complex geological history and is also profoundly biodiverse. This is also true in some parts of Mindanao. This is the reason why so many biologists are drawn to the Philippines—and why many dedicate their careers to protecting its forests.


The study, titled “Three new species of Philippine forest mice (Apomys, Muridae, Mammalia), members of a clade endemic to Mindoro Island,” is now published in the journal Zootaxa.


References:

Heaney, L.R., Balete, D.S., Duya, M.R.M., Duya, M.V., Kyriazis, C.C., Rickart, E.A., Steppan, S.J. & Rowsey, D.M. (2025) Three new species of Philippine forest mice (Apomys, Muridae, Mammalia), members of a clade endemic to Mindoro Island. Zootaxa, 5647 (1), 1–26. https://doi.org/10.11646/zootaxa.5647.1.1

 

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UP Study Reveals Insights on the Probiotic and Antifungal Benefits of Bacteria in Burong Isda

UP Study Reveals Insights on the Probiotic and Antifungal Benefits of Bacteria in Burong Isda

Published: June 20, 2025
By: Harvey Sapigao

Limosilactobacillus fermentum colonies on agar, derived from burong isda. (Photo credit: Joshua Veluz)

Filipino fermented foods have long been known to contain bacteria that offer health benefits, also known as probiotics. Burong isda, a traditional fermented fish from Pampanga, contains a bacterium called Limosilactobacillus fermentum (L. fermentum), which is closely related to the well-known Lactobacillus probiotics.

 

Researchers from UP Diliman College of Science (UPD-CS) combined genomic and laboratory analyses to provide a comprehensive probiotic profile of two L. fermentum strains in burong isda. Their multidimensional approach also revealed the strains’ antifungal benefits against Aspergillus fumigatus (A. fumigatus), one of the most common fungi affecting immunodeficient individuals. Their study not only lays the groundwork for developing new probiotic products but is also possibly the first to report the antifungal effects of L. fermentum against A. fumigatus.

 

“Historically, probiotic research in the Philippines has relied heavily on culture-based methods and basic molecular techniques,”  said corresponding author Joshua Veluz from UPD-CS National Sciences Research Institute (NSRI). “This work underscores the value of combining genomics, metabolomics, and assays as a powerful and timely approach to uncovering the full probiotic potential of microbes found in Philippine fermented foods.”

 

Veluz, a Kapampangan, said that he has a keen interest in this research because he grew up eating burong isda. He became curious about its potential after learning that Filipino fermented foods also have health benefits aside from their cultural significance. This curiosity led him to begin working on the study in 2019. “This personal and academic connection made the study deeply meaningful to me,” he said.

 

Along with Veluz, the study authors are Paul Christian Gloria and Dr. Maria Auxilia Siringan of UPD-CS NSRI, along with Dr. Irineo Dogma Jr. of the University of Santo Tomas (UST).

 

A key characteristic of probiotics is their ability to survive the harsh conditions of the digestive system. They discovered that while these strains may struggle to grow in highly acidic environments like the stomach, they had no difficulty growing in less acidic conditions, as in most parts of the gastrointestinal tract.

 

Furthermore, the researchers discovered that the strains carry several genes known to help boost the host’s immune system, along with genes related to producing essential vitamins such as B1, B2, B6, and B9. The strains were also found to be non-pathogenic and have a very low potential to transfer antimicrobial resistance genes.

 

“Additionally, the strains produce compounds that inhibit the growth of certain fungi known to cause infections,” said Veluz. Previous studies have shown that L. fermentum possesses antifungal effects against different fungi, but this study may be the first to demonstrate its potential against A. fumigatus. This suggests that L. fermentum could serve as a broad antifungal product, including against A. fumigatus.

 

The researchers are now exploring additional probiotic properties of the strains and assessing their stability to ensure they can be safely used for future health applications. “We aim to further characterize their functional traits and contribute to the growing field of probiotic research in the Philippines, especially using OMICs,” concluded Veluz.

 

References:

Veluz, J. T., Gloria, P. C. T., Siringan, M. A. T., & Dogma, I. J. (2025). Beyond Buro: Probiotic and Antifungal Traits of Limosilactobacillus fermentum, from Philippine Burong Isda (Fermented Fish), Revealed by Genomics and Assays. The Microbe, 100334. https://doi.org/10.1016/j.microb.2025.100334

 

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UP Physicists Visualize Evolution of Global Values Over Four Decades

UP Physicists Visualize Evolution of Global Values Over Four Decades

Published: June 18, 2025
By: Eunice Jean C. Patron

Scientists from the University of the Philippines – Diliman College of Science’s National Institute of Physics (UPD-CS NIP) have generated culture maps using data from the Integrated Values Survey (IVS).

 

Scatter plots of individual respondents from four countries surveyed in Wave 7. (Photo credit: Euste et al., 2025)

Using a method called principal component analysis (PCA), physicists John Lawrence Euste, Hannah Christina Arjonillo, and Dr. Caesar Saloma derived time-resolved pairs of complementary maps from the IVS data collected over forty years from over 120 countries: one showing cultural differences between countries, and the other showing cultural variations within a specific country, based on survey respondents. A total of seven separate surveys were conducted from 1981 to 2022.

 

Measuring culture change

 

“From our perspective as applied physicists, we wanted to detect and measure how culture has evolved, which is usually only described anecdotally,” Dr. Saloma shared, explaining that their work falls under sociophysics, a branch of physics concerned with modeling and quantifying social phenomena using methods initially developed in statistical and instrumentation physics. “We tried to quantify how culture varies over time in geographically separated populations,” he added.

 

Countries are represented as points on the first map. By tracking their movement over time, the team found that countries have generally become more focused on self-expression values. In the second map, the points represent respondents within each country. The team measured cultural diversity using the standard deviational ellipse (SDE) area. Countries with smaller SDEs exhibited less cultural diversity and tended to uphold more traditional values, while those with larger SDEs showed more cultural diversity and leaned more toward self-expression values.

 

“I looked into the literature to see if we could actually measure culture, and I found that there are models of cultural dynamics and change,” Euste said, explaining how he became interested in quantifying cultural change. “But then I realized that there weren’t many models that actually examined real-world cultural dynamics—how cultural values have changed based on actual empirical data.”

 

Transforming data into cultural maps

 

The physicists first aggregated the survey data (more than 300,000 total respondents) by averaging responses per country. Next, they applied PCA to the country-aggregated responses. This approach generated a map where each country is represented as a single point, making it easier to analyze cultural differences between countries.

 

“But the country-level map only shows each country as a single point, which doesn’t reflect the cultural diversity within countries. For example, the Philippines isn’t culturally homogeneous; it doesn’t make sense to represent the whole country with just one cultural profile,” Euste noted. So they used the transformation matrix derived from the country-level PCA. This matrix helps map individual responses into coordinates on the same cultural map, ensuring consistency between the country-level and respondent-level representations.

 

“This method ensures that the outputs from both levels are consistent,” Arjonillo added. “The third approach helps align the two, allowing us to compare both the country means and the full respondent distributions over time.” 

At the country level, the physicists discovered that the Philippines is currently traditional—placing a high premium on religion, parent-child ties, deference to authority, and traditional family structures—but also leans toward self-expression through support for environmental protection, gender equality, and active participation in collective socio-economic life. From 1996 to 2019, the country has shown a slight decline in traditional values and a rise in self-expression.

 

Interestingly, the countries that are culturally closest to the Philippines are Latin American nations like Bolivia, Guatemala, Mexico, and Nicaragua—likely a reflection of the country’s history of over 300 years of Spanish colonization, rather than its geographic neighbors in East or Southeast Asia.

 

Real-world applications

 

The physicists believe that their findings and the approaches they used can serve as tools to support policymakers in decision-making. “The study can help people understand how cultural values change over time, guiding policymakers in tailoring policies that better align with a country’s cultural values,” Euste said. “This is useful for understanding broader cultural trends and how they evolve.”

 

Dr. Saloma explains that legislations, policies, and regulations are more effective if they are grounded on scientific evidence. “Policies work best when they rely on scientific data and findings; it’s why quantifying cultural evolution matters,” he added.

 

“[Our study] is still a work in progress,” Arjonillo concluded. “What’s important for us is to create tools for measurement—that’s the point of instrumentation. This is what we hope to evaluate and continue making progress on, not just in physics, but wherever we can find useful data.”

 

References:

Euste, J. L., Arjonillo, H. C., & Saloma, C. (2025). Time-resolved culture maps derived from the integrated values survey data (1981–2022). Physica A: Statistical Mechanics and its Applications, 659, 130317. https://doi.org/10.1016/j.physa.2024.130317

 

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Ang Nakaabang na Krisis: Kalidad ng Groundwater sa Pilipinas at Kung Bakit Ito Mahalaga

Ang Nakaabang na Krisis:
Kalidad ng Groundwater sa Pilipinas at Kung Bakit Ito Mahalaga

Published: June 11, 2025
By: John Kenneth R. Fraga
Translated by: Dr. Ian Kendrich C. Fontanilla

Sinusukat ng mga kawani ng PGHI Project ang kalidad ng tubig sa ilalim ng lupa gamit ang multimeter sa isa sa mga kagubatang lugar sa Ilocos Sur. (Photo credit: Jacquilyn L. Estrada)

Ang groundwater—tubig na nakatago sa ilalim ng lupa—ay isang likas-yamang hindi nakikita, ngunit tiyak na hindi nalalayo sa isipan ng mga Pilipino. Ang hindi tagong yamang ito ay mahalaga para sa pang-araw-araw na buhay, lalo na sa agrikultura, kung saan ito ang nagbibigay-buhay sa irigasyon. Gayunpaman, habang lumalaki ang ating pangangailangan sa pagkain at lumalalim pa ang naabot natin sa ilalim ng lupa gamit ang teknolohiya, nahaharap sa isang malubhang krisis ang estado ng groundwater dahil sa labis na paggamit nito at kontaminasyon na nangangailangan ng agarang pansin.

 

Sa Pilipinas, lalong pinalalala ang mga problemang ito ng mga natatanging hamon na dulot ng tag-ulan at tag-init panahon sa bansa. Sa matitinding panahon, ang mga run-off mula sa mga sakahan ay maaaring magdala ng mga nakapipinsalang kemikal sa ilalim ng lupa, na nagbabanta sa ecological services na ibinibigay nito, ang biodiversity sa lugar, at ang public health. Sa kasamaang palad, sa kabila ng mga pagsisikap na subaybayan ang water quality, ang buong lawak ng mga problemang ito ay hindi lubos na nauunawaan. Bunsod nito, hindi pa buo ang mga datos na nakakalap at hindi rin pare-pareho ang pagsusuring ginagawa sa buong bansa.

 

Isang pangkat ng mga mananaliksik na pinamumunuan ni Dr. Francis S. Magbanua ng University of the Philippines Diliman College of Science, Institute of Biology (UPD-CS IB), at partners sa proyekto mula sa Ilocos Sur, Benguet, Nueva Ecija, Cebu, at Davao del Norte ay masusing sinusuri ang sitwasyon. Ang kanilang pag-aaral ay nakatuon sa kung paano nag-iiba ang kalidad ng groundwater sa pagitan ng mga agrikultural at magugubat lugar sa nag-iibang panahon. Ang kanilang natuklasan ay kapwa nagbibigay-liwanag at nakababahala.

 

Ipinakita ng pananaliksik na ang paggamit ng lupa (gawing sakahan o panatilihin ang gubat) at ang panahon (tag-ulan o tag-init) ay may malaking epekto sa kalidad ng groundwater, ngunit sa magkaibang paraan. Ang paggamit ng lupain para sa agrikultura ay madalas nagdudulot ng groundwater na mas mainit at mas mayaman sa kemikal ngunit mas mababa rin ang kalidad. Tumataas din ang panganib ng kontaminasyon ng groundwater kapag talamak ang mga gawaing pang-agrikultura. Ang mga magugubat lugar, sa kabilang banda, ay tumutulong sa pagpapanatili ng groundwater na mas malamig, mas malinis, at mas mayaman sa oxygen. Gayunpaman, ang anyo ng lupa—tulad ng mga matatarik na slope—ay maaaring makaapekto sa dami ng organic matter na naiipon sa groundwater.

 

Sa panahon ng tag-ulan, ang pagtaas ng pag-ulan ay tumutulong na palamigin ang groundwater at mapabuti ang antas ng oxygen nito. Pinapataas din nito ang pH habang dinadala ng tubig-ulan ang mga mineral at organic matter sa ilalim ng lupa. Baliktad nito, ang tag-init ay nagdudulot naman ng mas mainit na temperatura ng tubig sa lupa. Bagaman maaaring tumaas antas ng oxygen dahil bumabagal ang daloy ng tubig, ang pangkalahatang kalidad ng groundwater ay maaaring bumaba rin. Ang mas mababang antas naman ng groundwater ay maaaring magdulot ng mas mataas na konsentrasyon ng dissolved ions at iba pang suliranin ukol sa kalidad ng tubig. Sa kabilang banda, natuklasan ng pag-aaral na walang pinagsamang epekto ang paggamit ng lupa at panahon, na nangangahulugang habang ang bawat factor ay may kanya-kanyang epekto sa groundwater, hindi nila pinapaigting ang epekto ng bawat isa.

 

Ngunit kahit tila hindi nakatali sa isa’t isa ang mga epektong ito, malinaw ang mensahe: parehong mahalaga ang paggamit ng lupa at mga pagbabago sa panahon upang maunawaan ang kalagayan ng mga pinagkukunan natin ng groundwater. Halimbawa, ang pagkakaroon ng dissolved organic compounds (DOC) ay maaaring pahiwatig ng mga aktibidad ng tao malapit sa groundwater, ngunit batay sa pag-aaral, nakikita rin ang DOC sa mga magugubat na lugar, na maaaring maging indikasyon ng disturbances dulot ng paggamit ng lupa ng tao.

 

Paghahambing ng mga na-transpormang halaga ng temperatura ng groundwater, pH, DO, EC, at DOC batay sa mga panahon (tagtuyot vs tag-ulan) at gamit ng lupa (pang-agrikultura vs kagubatan) (Photo credit: Velasco et al., 2025)

“Isang limitadong yaman ang groundwater, at ang kalidad nito ay patuloy na bumababa,” babala ng mga mananaliksik. “Ang paglaki ng ating populasyon, pag-unlad ng ekonomiya, at mga pagbabago sa kapaligiran ay lahat nag-aambag sa pressure sa mahalagang yamang ito.” Binibigyang-diin ng pag-aaral na patuloy na lalala ang mga panganib sa public health at biodiversity kung walang isasagawaang komprehensibong pambansang paraan ng pamamahala at pagbabantay ng kalidad ng groundwater.


Ang pag-aaral na ito ay bahagi lamang ng mas malawak na pananaliksik na tinaguriang Philippine Groundwater Health Index (PGHI) Project, na naglalayong mas maunawaan at maprotektahan ang groundwater sa bansa. Pinondohan ng Department of Science and Technology (DOST) at minomonitor ng DOST-Philippine Council for Agriculture, Aquatic, and Natural Resources Research and Development (PCAARRD), layunin ng proyekto na magbigay ng siyentipikong kaalaman para makabuo ng mga epektibong polisiya upang mapangalagaan ang mahalagang yamang ito. Ang mga mananaliksik ay nangolekta ng tubig mula sa mga balon at bukal sa mga agrikultural at magugubat na lugar sa limang lalawigan: Ilocos Sur, Benguet, Nueva Ecija, Cebu, at Davao del Norte.


Sa huli, binibigyang-diin ng pag-aaral ang isang simple ngunit mahalagang katotohanan: ang malinis at ligtas na groundwater ay kritikal para sa kinabukasan ng Pilipinas. Sa pamamagitan ng pagkilala sa factors na nakakaapekto sa kalidad ng groundwater at paggawa ng mga hakbang upang protektahan ito, maaari nating matiyak na ang mga susunod na henerasyon ay magkakaroon ng access sa malinis na tubig na kakailanganin tungo sa pag-unlad.


References:

Velasco, A. B., Magbanua, F. S., del Rosario, J. S., Estrada, J. L., Fraga, J. K. R., Mondejar, J. P., Sapitan, J. F. J. F., Geroza, I. P., Tenoc. G. L., & Husana, D. E. M. 2024. Groundwater Quality Variations during Wet and Dry Seasons in Agricultural and Forested Areas in the Philippines. Water Resources, 51(2), 293–305. DOI: 10.1134/S0097807824604849

 

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UP Researchers Predict Antimicrobial Resistance Using AI Models

UP Researchers Predict Antimicrobial Resistance Using AI Models

Published: June 13, 2025
By: Eunice Jean C. Patron

Escherichia coli (E. coli) is a common bacterium that lives in the intestines of animals and humans, and it is often used to identify fecal contamination within the environment. E. coli can also easily develop resistance to antibiotics, making it an ideal organism for testing antimicrobial resistance—especially in certain agricultural environments where fecal material is used as manure or wastewater is reused.

 

Traditional laboratory methods for analyzing antimicrobial resistance are often time-consuming and labor-intensive, making them impractical for large-scale monitoring. As a result, researchers are exploring faster approaches using whole-genome sequencing (WGS) and predictive modeling.

 

Marco Christopher Lopez and Dr. Pierangeli Vital of the University of the Philippines – Diliman College of Science’s Natural Sciences Research Institute (UPD-CS NSRI), along with Dr. Joseph Ryan Lansangan of the UPD School of Statistics, tested various artificial intelligence (AI) prediction models to determine the antimicrobial resistance of E. coli using genetic data and laboratory test results from the National Center for Biotechnology Information (NCBI) database.

Disk Diffusion Assay plate. (Photo credit: Dr. Pierangeli Vital)

“We selected the models based on their strengths in handling biological and imbalanced data,” Dr. Vital explained. “These models were chosen to compare performance across different learning strategies and to identify which is most suitable for predicting antibiotic resistance.”

 

The AI models used were Random Forest (RF), which is well-suited for high-dimensional data; Support Vector Machine (SVM), which excels in classification tasks, particularly when dealing with complex decision boundaries; and two ensemble methods—Adaptive Boosting (AB) and Extreme Gradient Boosting (XGB)—which enhance accuracy by focusing on hard-to-classify samples.

 

These AI prediction models most accurately predicted resistance to streptomycin and tetracycline, showing high accuracy and reliably distinguishing resistant strains from susceptible ones. On the other hand, ciprofloxacin was the most challenging to predict due to the limited number of resistant samples in the data (only 4%), which led to difficulty in identifying resistance and poor sensitivity. Among the models, AB and XGB consistently delivered good results, even when tested on imbalanced antimicrobial resistance data.

 

“We think that this strategy has great potential for real-time monitoring of antimicrobial resistance, particularly in agriculture.” Dr. Vital said, emphasizing the potential use of AI prediction models in the sector. “As DNA sequencing becomes faster and cheaper, prediction models such as ours can pick up resistant bacteria early—before they lead to outbreaks. This can facilitate better decision-making in food safety, agriculture, and public health programs.”

 

The researchers recommend including more diverse sample types and data sources—such as metagenomic data, which is DNA from all microbes in a sample—to better understand and predict how bacteria develop resistance.

 

Dr. Vital also highlighted the value of collaboration between fields—like how microbiologists and statisticians worked together in this study. “More so, the integration of (micro)biological concepts to statistics and predictive modelling to have an impactful result/outcome to the community, in this instance, agricultural food safety.” she said.

 

The study, titled “Prediction models for antimicrobial resistance of Escherichia coli in an agricultural setting around Metro Manila, Philippines,” was published in the Malaysian Journal of Microbiology, an open-access, peer-reviewed journal that serves as a platform for scientific communication among researchers and academics working with microbes and microbial products. It was also funded by NSRI and the Department of Science and Technology’s Grant to Outstanding Achievements in Science and Technology through the National Academy of Science and Technology.

 

References:

Lopez, M. C. D. P., Lansangan, J. R. G., & Vital, P. G. (2025). Prediction models for antimicrobial resistance of Escherichia coli in an agricultural setting around Metro Manila, Philippines. Malaysian Journal of Microbiology. https://doi.org/10.21161/mjm.240650

 

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